Page Not Found
Page not found. Your pixels are in another canvas.
Sitemap
A list of all the posts and pages found on the site. For you robots out there is an XML version available for digesting as well.
Pages
Page not in menu
This is a page not in th emain menu
Posts
Future Blog Post
Published:
This post will show up by default. To disable scheduling of future posts, edit config.yml and set future: false.
Blog Post number 4
Published:
This is a sample blog post. Lorem ipsum I can’t remember the rest of lorem ipsum and don’t have an internet connection right now. Testing testing testing this blog post. Blog posts are cool.
Blog Post number 3
Published:
This is a sample blog post. Lorem ipsum I can’t remember the rest of lorem ipsum and don’t have an internet connection right now. Testing testing testing this blog post. Blog posts are cool.
Blog Post number 2
Published:
This is a sample blog post. Lorem ipsum I can’t remember the rest of lorem ipsum and don’t have an internet connection right now. Testing testing testing this blog post. Blog posts are cool.
Blog Post number 1
Published:
This is a sample blog post. Lorem ipsum I can’t remember the rest of lorem ipsum and don’t have an internet connection right now. Testing testing testing this blog post. Blog posts are cool.
portfolio
Reconstruction Algorithms for DNA-Storage Systems
Implementations of reconstruction algorithms for DNA Storage Systems.
GitHub: link 
A DNA reconstruction algorithm is a mapping which receives t traces y1, …, yt as an input and produces x^, an estimation of x. The goal in the DNA reconstruction problem is to minimize the edit distance between the original string and the algorithm’s estimation. For the deletion channel case, the problem is referred by the deletion DNA reconstruction problem and the goal is to minimize the Levenshtein distance.
SOLQC: Synthetic Oligo Library Quality Control Tool.
SOLQC is a novel analysis tool, which enables fast and comprehensive analysis of synthetic oligo libraries enabling the user comprehensive information and insights about the quality and state of the library. 
Software link
Git link
The SOLQC software is a joint effort between Eitan Yaakobi’s Group (CS department, Technion) and Zohar Yakhini’s Group (CS department, Technion and CS department, IDC Herzliya).
publications
The Error Probability of Maximum-Likelihood Decoding over Two Deletion Channels
Published in IEEE International Symposium on Information Theory (ISIT), 2020
Recommended citation: O. Sabary, E. Yaakobi, and A. Yucovich, ”The Error Probability of Maximum-Likelihood Decoding over Two Deletion Channels," arXiv preprint, arXiv:2001.05582, 2020 https://arxiv.org/abs/2001.05582
SOLQC: Synthetic Oligo Library Quality Control Tool
Published in Bioinformatics, 2020
Recommended citation: O. Sabary, Y. Orlev, R. Shafir, L. Anavy, E. Yaakobi, Z. Yakhini, SOLQC: Synthetic Oligo Library Quality Control tool, Bioinformatics, , btaa740, https://doi.org/10.1093/bioinformatics/btaa740 https://academic.oup.com/bioinformatics/advance-article-abstract/doi/10.1093/bioinformatics/btaa740/5896982
Reconstruction Algorithms for DNA Storage Systems
Published in 26th International Conference on DNA Computing and Molecular Programming, 2020
Recommended citation: O. Sabary, A. Yucovich, G. Shapira, E. Yaakobi, “Reconstruction Algorithms for DNA-Storage Systems,” bioRxiv2020.09.16.300186;doi:https://doi.org/10.1101/2020.09.16.300186, 2020 https://www.biorxiv.org/content/10.1101/2020.09.16.300186v1.full
Decoding for Optimal Expected Normalized Distance over the t-Deletion Channel
Published in IEEE International Symposium of Information Theory (ISIT), 2021
Recommended citation: D. Bar-Lev, Y. Gershon, O. Sabary, and E. Yaakobi. "Decoding for Optimal Expected Normalized Distance over the t-Deletion Channel,", IEEE International Symposium of Information Theory (ISIT), 2021.
Sequence Reconstruction Under Stutter Noise in Enzymatic DNA Synthesis
Published in , 2021
Recommended citation: R. Shafir, O. Sabary, L. Anavy, E. Yaakobi, and Z. Yakhini. "Sequence Reconstruction Under Stutter Noise in Enzymatic DNA Synthesis", Submitted to IEEE Information Theory Workshop (ITW), 2021.
The Intersection of Insertion and Deletion Balls
Published in , 2021
Recommended citation: D. Bar-Lev, O. Sabary, Y. Gershon, and E. Yaakobi. "The Intersection of Insertion and Deletion Balls,", Submitted to IEEE Information Theory Workshop (ITW), 2021
Decoding for Optimal Expected Normalized Distance over the t-Deletion Channel
Published in 13th Non-Volatile Memories Workshop, 2022
Recommended citation: G. Chaykin, N. Stein, O. Sabary, D. Ben-Shabat, and E. Yaakobi. "DNA-Storalator: End-to-End DNA Storage Simulator,", 13th Non-Volatile Memories Workshop, San Diego, California, 2022.
talks
teaching
Teaching experience 1
Undergraduate course, University 1, Department, 2014
This is a description of a teaching experience. You can use markdown like any other post.
Teaching experience 2
Workshop, University 1, Department, 2015
This is a description of a teaching experience. You can use markdown like any other post.